People

Kévin Lebrigand, PhD is head of Bioinformatics at the Institute of Molecular and Cellular Pharmacology of CNRS in Nice-Sophia-Antipolis. Since 2015 i focused my expertise on methodological developments around single cell, and more recently on spatial transcriptomics, using 10x Genomics Chromium and Visium libraries sequenced on a Nanopore PromethION long-read sequencer to perform isoform-level profiling at the spatial resolution of the single cell. I'm an expert of R and Python statistical analysis of genomics data, focusing my interest on imaging-based spatial transcriptomics data analysis (access researchgate).

Marin Truchi, PhD has successfully defended its PhD entitled 'Le séquençage de transcrits sur cellule unique appliqué à l’étude des mécanismes de formation et de résolution de la fibrose pulmonaire' conducted in Bernard Mari's group earlier this year (2023). Marin is in charge of the data analysis and bioinformatics developments to support IPMC technological platforms and groups research.

Eamon Mcandrew is a LongTREC (réseau doctoral du programme d'action Marie Sklodowska-Curie) PhD candidate in Pascal Barbry's research group. Initially specialized in wet-lab and engineering, with emphasis on industrial drug production, i transitioned to a computational focus during my Masters program at University of Galway. I'm a PhD candidate in Pascal Barbry's team on the subject "Long-read Single-Cell and Spatial Transcriptomics to Uncover the Diversity of Isoform Expression". I aim to develop an Isoform Resolution Single-cell Atlas with a robust and scalable web application, to develop Artificial Intelligence tools to refine the assessment and interpretation of isoform differences and hypothesise isoform functionalities and apply spatial transcriptomics approaches to analyse the spatial patterning of splicing factor expression and determine its role in isoform diversity to decipher alternative splicing regulatory mechanisms. Eamon is in charge for the co-development (with Anna Diamnd) of a python package named Allos, [Access Github](https://github.com/cobioda/allos)

Morgane Fierville is a UniCA PhD candidate in Pascal Barbry's research team. Morgane is working on development of computational method for the anaysis and study of imaging-based Spatial Transcriptomics using 10xGenomics Xenium and Merscope Vizgen plateforms. Morgane is in charge for the development of a python package named scispy, [Access Github](https://github.com/cobioda/scispy)

Anna Diamant is a UniCA PhD candidate in Bernard Mari and Georges Vassaux 's research team. Anna is working on development of computational method for the anaysis and studying of isoform-level expression at he single cell resolution using long-read sequencing.

Juejun Chen is a UniCA PhD candidate in Pascal Barbry 's research team. Juejun is working on development of computational method for the anaysis of wasterwater samples to highlight and monitor pathogens presence along time.

Thomas Hermet, CDD works in Bernard Mari and Georges Vassaux team working on a BPI granted project concerning the setup of consolidate an existing proof of concept to produce an in vitro test for the identification of non-genotoxic carcinogens (NGTxC), by combining the latest generation genomics tools and innovative AI approaches

Catherine Bonjour, CDD works in Bernard Mari and Georges Vassaux team working on a BPI granted project concerning the setup of consolidate an existing proof of concept to produce an in vitro test for the identification of non-genotoxic carcinogens (NGTxC), by combining the latest generation genomics tools and innovative AI approaches